libmesh still uses contrib/netcdf (not local copy)


SUBMITTED BY: Guest

DATE: March 23, 2021, 9:30 p.m.

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  1. <<< Configuring library with NetCDF version 4 support >>>
  2. --8<--
  3. === configuring in contrib/netcdf/v4 (/pkg/libmesh/src/build/contrib/netcdf/v4)
  4. --8<--
  5. configure: netCDF 4.6.2
  6. --8<--
  7. checking whether we should build netCDF-4... yes
  8. --8<--
  9. checking whether netCDF-4 logging is enabled... no
  10. --8<--
  11. checking whether netcdf4 group names for DAP2 should be enabled (default on)... yes
  12. --8<--
  13. checking whether v2 netCDF API should be built... yes
  14. /pkg/libmesh/src/libmesh/contrib/netcdf/v4/configure: line 15491: type: -std=gnu++17: not found
  15. --8<--
  16. checking whether parallel I/O is enabled for netcdf-4... yes
  17. --8<--
  18. checking what to call the output of the ftpbin target... binary-netcdf-4.6.2.tar mpif90 mpicxx -std=gnu++17
  19. --8<--
  20. config.status: creating netcdf.pc
  21. config.status: creating libnetcdf.settings
  22. config.status: creating postinstall.sh
  23. config.status: creating include/netcdf_meta.h
  24. --8<--
  25. config.status: linking /pkg/libmesh/src/libmesh/contrib/netcdf/v4/nc_test4/ref_hdf5_compat1.nc to nc_test4/ref_hdf5_compat1.nc
  26. config.status: linking /pkg/libmesh/src/libmesh/contrib/netcdf/v4/nc_test4/ref_hdf5_compat2.nc to nc_test4/ref_hdf5_compat2.nc
  27. config.status: linking /pkg/libmesh/src/libmesh/contrib/netcdf/v4/nc_test4/ref_hdf5_compat3.nc to nc_test4/ref_hdf5_compat3.nc
  28. config.status: linking /pkg/libmesh/src/libmesh/contrib/netcdf/v4/hdf4_test/ref_chunked.hdf4 to hdf4_test/ref_chunked.hdf4
  29. config.status: linking /pkg/libmesh/src/libmesh/contrib/netcdf/v4/hdf4_test/ref_contiguous.hdf4 to hdf4_test/ref_contiguous.hdf4
  30. config.status: executing libtool commands
  31. # NetCDF C Configuration Summary
  32. ==============================
  33. # General
  34. -------
  35. NetCDF Version: 4.6.2
  36. Configured On:
  37. Host System: x86_64-pc-linux-gnu
  38. Build Directory: /pkg/libmesh/src/build/contrib/netcdf/v4
  39. Install Prefix: /usr
  40. # Compiling Options
  41. -----------------
  42. C Compiler: /usr/bin/mpicc
  43. CFLAGS: -fPIC -fopenmp -O3 -march=x86-64 -mtune=generic
  44. CPPFLAGS: -fPIC -fopenmp -O3 -march=x86-64 -mtune=generic -O2 -D_FORTIFY_SOURCE=2
  45. LDFLAGS: -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now
  46. AM_CFLAGS:
  47. AM_CPPFLAGS:
  48. AM_LDFLAGS:
  49. Shared Library: yes
  50. Static Library: yes
  51. Extra libraries: -lhdf5_hl -lm -lsz -lz -lcurl -L/lib -lhdf5 -Wl,-rpath,/lib -ldl
  52. # Features
  53. --------
  54. NetCDF-2 API: yes
  55. HDF4 Support: no
  56. NetCDF-4 API: yes
  57. NC-4 Parallel Support: yes
  58. PnetCDF Support: no
  59. DAP2 Support: yes
  60. DAP4 Support: yes
  61. Diskless Support: yes
  62. MMap Support: no
  63. JNA Support: no
  64. CDF5 Support: yes
  65. ERANGE Fill Support: no
  66. Relaxed Boundary Check: yes
  67. === configuring in contrib/timpi (/pkg/libmesh/src/build/contrib/timpi)
  68. configure: running /bin/sh /pkg/libmesh/src/libmesh/contrib/timpi/configure --disable-option-checking '--prefix=/usr' '--sysconfdir=/etc/' '--bindir=/usr/bin' '--datadir=/usr/share' '--docdir=/usr/share/doc/libmesh' '--with-pic' '--enable-march' '--enable-shared' '--enable-cxx11-required' '--enable-petsc-hypre-required' '--enable-metaphysicl-required' '--enable-complex' '--enable-curl' '--enable-fftw' '--enable-hdf5' '--enable-mpi' '--with-metis=PETSc' '--enable-mumps' '--with-mumps=/usr/include' '--with-mumps-lib=/usr/lib' '--enable-netcdf' '--with-netcdf=/usr/include' '--with-netcdf-lib=/usr/lib' '--with-nlopt=/usr/include' '--with-nlopt-lib=/usr/lib' '--enable-vtk-required' '--enable-ifem' '--enable-unique-id' '--enable-nodeconstraint' '--enable-superlu' 'PETSC_DIR=/usr/local/petsc/linux-c-opt' 'CFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now' 'CPPFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic -O2 -D_FORTIFY_SOURCE=2' 'FCFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'FFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'CXXFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic -O2 -D_FORTIFY_SOURCE=2' 'METHODS=opt dbg' '--enable-dap' '--disable-testsets' 'CXX=mpicxx -std=gnu++17' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= -fPIC -fopenmp -O3 -march=x86-64 -mtune=generic -O2 -D_FORTIFY_SOURCE=2' 'LIBS=-L/lib -lhdf5 -Wl,-rpath,/lib -ldl ' --cache-file=/dev/null --srcdir=/pkg/libmesh/src/libmesh/contrib/timpi
  69. --8<--
  70. netcdf........................... : yes
  71. version....................... : 4

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