// "BatchProcessFolders"
//
// This macro batch processes all the files in a folder and any
// subfolders in that folder. In this example, it runs the Subtract
// Background command of TIFF files. For other kinds of processing,
// edit the processFile() function at the end of this macro.
requires("1.33s");
dir = getDirectory("Choose a Directory ");
setBatchMode(true);
count = 0;
countFiles(dir);
n = 0;
processFiles(dir);
//print(count+" files processed");
function countFiles(dir) {
list = getFileList(dir);
for (i=0; i<list.length; i++) {
if (endsWith(list[i], "/"))
countFiles(""+dir+list[i]);
else
count++;
}
}
function processFiles(dir) {
list = getFileList(dir);
for (i=0; i<list.length; i++) {
if (endsWith(list[i], "/"))
processFiles(""+dir+list[i]);
else {
showProgress(n++, count);
path = dir+list[i];
processFile(path);
}
}
}
function processFile(path) {
if (endsWith(path, ".tif")) {
open(path);
run("Subtract Background...", "rolling=50 white");
save(path);
close();
}
}
